Showing : wgcna package • reset
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WGCNA trait order in heat map
wgcna WGCNA wgcna package
5.6 years ago coyoung ▴ 10
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3
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4.2k
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Module preservation WGCNA
wgcna wgcna package modulepreservation
written 6.8 years ago by ▴ 40
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2.5k
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WGCNA: Matching eigengenes to samples
wgcna wgcna package
6.8 years ago Jack • 0
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2
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1.6k
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Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package wgcna
6.9 years ago anni.djurhuus • 0
2
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3
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2.0k
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Problem for finding "Locus Link ID" from Annotation file
wgcna package TCGA LocusLinkID genecode ensembl
updated 6.9 years ago by 68k • written 6.9 years ago by ▴ 10
0
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2
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4.0k
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TOMplot error: "color" is not a graphical parameter (WGCNA)
wgcna package software error
updated 7.0 years ago by ★ 3.0k • written 7.0 years ago by • 0
0
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0
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1.4k
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consensus module relationship
wgcna wgcna package consensus
7.0 years ago 2323982403 ▴ 60
2
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4
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2.0k
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Segfault error when loading WGCNA
wgcna wgcna package
7.0 years ago antoinefelden ▴ 10
2
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2
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6.3k
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WGCNA extract genes from a module
WGCNA wgcna package
updated 7.1 years ago by ★ 3.0k • written 7.1 years ago by ▴ 10
1
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3
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1.8k
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SampleNetwork in WGCNA
wgcna wgcna package
7.1 years ago 2323982403 ▴ 60
0
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3.0k
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Use of bicor in WGCNA
WGCNA wgcna package wgcna bicor
7.1 years ago bekah ▴ 40
12
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15
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23k
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WGCNA: Understanding module-trait correlations
wgcna package
updated 7.1 years ago by ★ 3.0k • written 7.1 years ago by ▴ 40
0
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2
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1.3k
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problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq WGCNA package soft power
updated 5 weeks ago by • 0 • written 7.2 years ago by ▴ 10
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Comment: replace cat with message in glmTreat when lfc = 0 by ATpoint ★ 4.9k
> but there is no way to capture this type of printing when you're fully aware of what is happening and don't want to see the messages (e.g…
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
Normalization or filtering are never done for subsets of samples in any limma or edgeR analysis. These things must always be done globally.
Answer: DESeq2 interactions by swbarnes2 ★ 1.4k
The simpler way to do the first four comparisons is to make a new column in colData that is temp_pollution, and specify that column alone a…
Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k
You are. The reason I pointed you to `forgeBSgenomeDataPkgFromTwobitFile` is because it's much simpler, doesn't require a seed file, and is…
Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by mat149 ▴ 80
I've tried the following, but I must be missing something: setwd("C:\\Users\\....\\wd\\dump\\seqs_srcdir") e122<-readDNA…
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Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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